PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23505
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 104aa    MW: 12293.2 Da    PI: 10.4861
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23505genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.7e-056890123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               +kC++C+k +  +s+ k H +t+
  Tp57577_TGAC_v2_mRNA23505 68 WKCEKCSKKYAVQSDWKAHTKTC 90
                               58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-55598No hitNo description
Gene3DG3DSA:3.30.160.601.2E-55689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
QRDQNLQLHR RGHNLPWKLR QRSNKDVIKK KVYICPEKTC VHHDPSRALG DLTGIKKHFS  60
RKHGEKKWKC EKCSKKYAVQ SDWKAHTKTC GTREYKCDCG TLFS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304416.12e-73PREDICTED: zinc finger protein JACKDAW
SwissprotQ700D28e-67IDD10_ARATH; Zinc finger protein JACKDAW
TrEMBLA0A067EAZ32e-72A0A067EAZ3_CITSI; Uncharacterized protein
TrEMBLV4SXX22e-72V4SXX2_9R
STRINGPOPTR_0006s13130.15e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.19e-57indeterminate(ID)-domain 7